The BEST Healthy Double Chocolate Muffins!! These muffins are flourless, dairy-free, gluten-free and made with simple ingredients for a nourishing and delicious muffin recipe.

If you’re craving rich, chocolatey muffins that satisfy your sweet tooth without all the processed ingredients, these Healthy Double Chocolate Chip Muffins are exactly what you need. Packed with wholesome ingredients and naturally sweetened, they’re perfect for breakfast, snacking, or even dessert. Plus, they’re incredibly easy to make and are naturally gluten-free and dairy-free!

Why You’ll Love These Muffins

  • Refined Sugar-Free: Sweetened with maple syrup and coconut sugar instead of refined sugars.

  • Naturally Gluten-Free: Made with creamy nut butter as the base, these muffins don’t require any flour.

  • Packed with Protein & Healthy Fats: Nut butter and eggs add a boost of protein and healthy fats to keep you satisfied.

  • Rich Chocolate Flavor: The combination of cacao powder and dark chocolate chips gives these muffins an irresistible fudgy texture.

Ingredients You’ll Need

To make these delicious Healthy Double Chocolate Chip Muffins, you’ll need:

  • Creamy nut butter –  Almond butter, peanut butter or cashew butter. Acts as the base of the muffins, providing healthy fats, protein, and a rich texture without the need for flour.
  • Unsweetened applesauce – A natural sweetener that also keeps the muffins moist while reducing the need for added fats.
  • Eggs Help bind the ingredients together while adding protein and structure to the muffins.
  • Maple syrupA natural sweetener that enhances the chocolate flavor without refined sugars.
  • Coconut sugarA minimally processed sugar with a lower glycemic index than refined white sugar.
  • Cacao powder –  A nutrient-dense superfood that’s packed with antioxidants and rich chocolate flavor.
  • Vanilla extract Adds depth and enhances the sweetness of the muffins.
  • Chocolate chips Provide extra bursts of chocolate while being lower in sugar than milk chocolate.

How to Make Healthy Double Chocolate Chip Muffins

  1. Preheat & Prep: Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease with oil.

  2. Mix Wet Ingredients: In a large mixing bowl, combine the nut butter, applesauce, eggs, maple syrup, coconut sugar, and vanilla extract. Stir until smooth and well combined.

  3. Add Dry Ingredients: Stir in the cacao powder and baking soda until evenly incorporated.

  4. Fold in Chocolate Chips: Gently fold in the dark chocolate chips, reserving a few for topping if desired.

  5. Fill the Muffin Tin: Spoon the batter evenly into the prepared muffin tin, filling each about 3/4 full.

  6. Bake: Bake for 18-22 minutes or until a toothpick inserted in the center comes out clean or with just a few moist crumbs.

  7. Cool & Enjoy: Let the muffins cool in the tin for 5 minutes before transferring to a wire rack to cool completely.

Tips for the Best Muffins

  • Use a Creamy Nut Butter: A smooth, natural nut butter works best for a consistent texture. Stir well if it’s separated.

  • Don’t Overmix: Stir until just combined to keep the muffins light and tender.

  • Adjust Sweetness: If you prefer a less sweet muffin, you can reduce the coconut sugar slightly.

  • Storage Tips: Store in an airtight container at room temperature for up to 3 days or refrigerate for up to a week. These muffins also freeze well!

Why These Muffins Are a Healthier Choice

These Healthy Double Chocolate Chip Muffins are a great alternative to traditional muffins that are often loaded with refined flour, sugar, and unhealthy oils. Let’s break down why each ingredient is a better-for-you choice:

  • Nut Butter: Provides protein, healthy fats, and essential vitamins.

  • Unsweetened Applesauce: Acts as a natural sweetener while keeping the muffins moist.

  • Cacao Powder: A superfood rich in antioxidants and magnesium.

  • Coconut Sugar & Maple Syrup: Less processed, natural sweeteners that have a lower glycemic impact compared to white sugar.

  • Dark Chocolate Chips: Contains less sugar and more antioxidants compared to milk chocolate.

Ways to Customize These Muffins

Want to switch things up? Here are a few variations to try:

  • Nut-Free Version: Use sunflower seed butter instead of nut butter for a school-safe option.

  • Extra Protein Boost: Add a scoop of chocolate or vanilla protein powder.

  • Add Nuts or Seeds: Stir in chopped walnuts, pecans, or chia seeds for extra texture.

  • Spiced Up: Add a pinch of cinnamon or espresso powder to enhance the chocolate flavor.

Perfect for Any Occasion

These Healthy Double Chocolate Chip Muffins make a fantastic addition to breakfast, an afternoon pick-me-up, or a wholesome treat to satisfy chocolate cravings. Whether you’re meal prepping for the week or looking for a quick and easy snack, you can feel good about indulging in these rich, fudgy muffins.

Give this recipe a try, and let us know how you like it! Enjoy your Healthy Double Chocolate Chip Muffins, and happy baking!

A Few Other Delicious Snack Recipes to Try

Chocolate Peanut Butter Muddy Buddy Bars

No-Bake Chocolate Peanut Butter Snack Bars (vegan + gluten-free)

No-bake Peanut Butter and Jelly Granola Bars

EASY Banana Yogurt Bites

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The BEST Healthy Double Chocolate Muffins (flourless!)

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The BEST Healthy Double Chocolate Muffins!! These muffins are flourless, dairy-free, gluten-free and made with simple ingredients for a nourishing and delicious muffin recipe.

  • Prep Time: 10 mins
  • Cook Time: 20 mins
  • Total Time: 30 mins

Yield: 910 muffins 1x

Ingredients

Scale

Instructions

  1. To begin: Preheat oven to 350 degrees F and grease a silicone muffin tray or line a standard muffin tray with liners
  2. Mix wet ingredients: In a large mixing bowl, combine the nut butter, applesauce, eggs, maple syrup, coconut sugar, and vanilla extract. Stir until smooth and well combined.
  3. Add dry ingredients: Stir in the cacao powder and baking soda until evenly incorporated.
  4. Fold in chocolate chips: Gently fold in the dark chocolate chips, reserving a few for topping if desired.
  5. Fill the muffin tin: Spoon the batter evenly into the prepared muffin tin, filling each about 3/4 full.
  6. Bake: Bake for 18-22 minutes or until a toothpick inserted in the center comes out clean or with just a few moist crumbs.
  7. Cool & enjoy: Let the muffins cool in the tin for 5 minutes before transferring to a wire rack to cool completely.

Notes

*Store in airtight container for 3 days, fridge for 5 days or freezer for 2 months

  • Author: Rachel